ZIBR - A Zero-Inflated Beta Random Effect Model
A two-part zero-inflated Beta regression model with random effects (ZIBR) for testing the association between microbial abundance and clinical covariates for longitudinal microbiome data. Eric Z. Chen and Hongzhe Li (2016) <doi:10.1093/bioinformatics/btw308>.
Last updated 1 years ago
5.86 score 30 stars 24 scripts 172 downloadsdemic - Dynamic Estimator of Microbial Communities
Multi-sample algorithm based on contigs and coverage values, to infer the relative distances of contigs from the replication origin and to accurately compare bacterial growth rates between samples. Yuan Gao and Hongzhe Li (2018) <doi:10.1038/s41592-018-0182-0>.
Last updated 1 years ago
2.70 score 3 scripts 208 downloads